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Add variant calling training material #292

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wants to merge 31 commits into from
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Add variant calling training material #292

wants to merge 31 commits into from

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lescai
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@lescai lescai commented Nov 3, 2023

This PR adds the training material for variant calling applications, using nf-core/sarek as discussed during the nf-core hackathon in Barcelona 2023.
Main features:

  • a theory recap on variant calling
  • specific config allows nf-core/sarek to run entirely on a gitpod environment
  • run through analysis and interpretation of results
    As a first draft for material of this type, all suggestions and improvements are welcome.
    Note I've added MathJax support as described in mkdocs, in order to enable mathematical formulas in the theory page.

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@lescai
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lescai commented Nov 3, 2023

since I have no permissions to request specific reviewers, just tagging here:

docs/variantcalling/index.md Outdated Show resolved Hide resolved
docs/variantcalling/theory.md Outdated Show resolved Hide resolved
docs/variantcalling/theory.md Outdated Show resolved Hide resolved
docs/variantcalling/sarek.md Outdated Show resolved Hide resolved
lescai and others added 2 commits November 15, 2023 12:26
lescai and others added 3 commits November 15, 2023 12:30
Co-authored-by: Marcel Ribeiro-Dantas <[email protected]>
Co-authored-by: Marcel Ribeiro-Dantas <[email protected]>
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🥳

@ewels ewels requested review from justinegeffen and vdauwera April 30, 2024 09:06
@lescai lescai closed this May 8, 2024
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2 participants